Table 1
Comparison of structural features between Oxy/Deoxy Hb
Deoxy (1hv4) |
Oxy (1a4f) |
|
α-chain |
||
No. residues |
141 |
141 |
Strands |
0 |
0 |
α-helices |
6 (69.5%)* |
7 (66%) |
310 helices |
2 (5.7%)* |
1 (4.3%) |
2° Struct |
HHGTTHTHTHTHG |
HTHGTTHTHHTHTHTT |
β-chain |
||
No. residues |
146 |
146 |
Strands |
0 |
0 |
α-helices |
7 (70.5%) |
7 (68.5%) |
310 helices |
2 (8.9%) |
2 (8.2%) |
2° Struct |
HHGHHTHTHGHT |
HTHGHHTHHGHT |
Deoxy: http://www.ebi.ac.uk/thornton-srv/databases/pdbsum/1hv4/main.html
Oxy: http://www.ebi.ac.uk/thornton-srv/databases/pdbsum/1a4f/main.html
Overall: 68.25% α-helix (i→i+4), 6.775% 310-helix (i→i+3).
*Note, the data in the shaded columns are most likely anomalous due to the relatively low resolution of the structure of the deoxy haemoglobin (2.80Å for 1vh4) vs. 2Å for the oxy haemoglobin (1a4f) as other deoxy haemoglobins (e.g., human adult, 2hhb; human foetal, 1fdh; P.bernacchii, 1hbh, etc.) showed no changes in the overall protein fold.